Hello Martin,
From the logs I see some “access denied” messages.
Could you check that the file /mnt/upload/AT/sen4cap_1602451417639/AT_MMB.shp really exists?
If not, could you give 777 access for /mnt/upload ?
Also, you could do a restart of the httpd service (sudo systemctl restart httpd).
If the /mnt/upload/AT/sen4cap_1602451417639/AT_MMB.shp exists, could you check that the following command under the user sen2agri-service and not under root (sudo su -l sen2agri-service) is executed ok:
python /var/www/html/scripts/check_shp.py -b /mnt/upload/AT/sen4cap_1602451417639/AT_MMB.shp
If you still obtain the python error with “Memory map” message above, you should check that the gdal bindings. Did you installed other versions of gdal on that machine or used pip to add/remove some packages that were related to gdal? Can you check the following:
Under the user sen2agri-service (sudo su -l sen2agri-service):
/usr/local/bin/gdal_translate --version
/usr/bin/gdal_translate --version
gdal-config --version
python
>> import osgeo.gdal
>> print osgeo.gdal.__version__
Hope this helps.
Best regards,
Cosmin