# /usr/share/sen2agri/S4C_L4B_GrasslandMowing/Bin/grassland_mowing.sh --script-path /usr/share/sen2agri/S4C_L4B_GrasslandMowing/Bin/src_s2/S2_main.py --site-id 5 --config-file /mnt/archive/grassland_mowing_files/rugaju_dwnld/2020/config/S4C_L4B_Config_2020.cfg --input-shape-file /mnt/archive/orchestrator_temp/s4c_l4b/1274/10307-s4c-grassland-gen-input-shp/SEN4CAP_L4B_GeneratedInputShp.shp --output-data-dir /mnt/archive/orchestrator_temp/s4c_l4b/1274/10308-s4c-grassland-mowing/SEN4CAP_L4B_S2_OutputData --start-date 2020-06-01 --end-date 2020-08-10 --seg-parcel-id-attribute NewID --output-shapefile /mnt/archive/orchestrator_temp/s4c_l4b/1274/10310-product-formatter/SEN4CAP_L4B_S1_S2_MowingDetection.shp --do-cmpl True --test True --input-products-list /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200807T093037_A20200625T093436 /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200807T094555_A20200720T093432 /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200809T002009_A20200608T094432 /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200809T004822_A20200613T094428 /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200809T011706_A20200618T094432 /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200809T014236_A20200623T094429 /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200809T020424_A20200628T094431 /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200809T022605_A20200703T094428 /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200809T025150_A20200708T094430 /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200809T032544_A20200713T094428 /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200809T035347_A20200718T094431 /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200809T042107_A20200802T094429 /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200809T044527_A20200807T094432 /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200810T002306_A20200605T093441 /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200810T004957_A20200625T093440 /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200810T011848_A20200720T093437 /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200810T014608_A20200725T093440 /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200810T021912_A20200809T093438 /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200811T002327_A20200608T094438 /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200811T005133_A20200613T094434 /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200811T011714_A20200618T094438 /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200811T014455_A20200623T094435 /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200811T020910_A20200628T094437 /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200811T023754_A20200708T094436 /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200811T031054_A20200713T094433 /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200811T034023_A20200718T094437 /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200811T040702_A20200723T094434 /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200811T043149_A20200807T094438
/usr/share/sen2agri/S4C_L4B_GrasslandMowing/Bin/src_s2/S2_main.py is absolute!
The parameter s4c-config-file defining the database parameters was not provided!
The default /etc/sen2agri/sen2agri.conf will be used
Activating conda sen4cap for user sen2agri-service
Executing source ~/.bashrc && conda activate sen4cap && python /usr/share/sen2agri/S4C_L4B_GrasslandMowing/Bin/src_s2/S2_main.py --s4c-config-file /etc/sen2agri/sen2agri.conf --site-id 5 --config-file /mnt/archive/grassland_mowing_files/rugaju_dwnld/2020/config/S4C_L4B_Config_2020.cfg --input-shape-file /mnt/archive/orchestrator_temp/s4c_l4b/1274/10307-s4c-grassland-gen-input-shp/SEN4CAP_L4B_GeneratedInputShp.shp --output-data-dir /mnt/archive/orchestrator_temp/s4c_l4b/1274/10308-s4c-grassland-mowing/SEN4CAP_L4B_S2_OutputData --new-acq-date 2020-08-10 --older-acq-date 2020-06-01 --seg-parcel-id-attribute NewID --output-shapefile /mnt/archive/orchestrator_temp/s4c_l4b/1274/10310-product-formatter/SEN4CAP_L4B_S1_S2_MowingDetection.shp --do-cmpl True --test True  --input-products-list /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200807T093037_A20200625T093436 /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200807T094555_A20200720T093432 /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200809T002009_A20200608T094432 /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200809T004822_A20200613T094428 /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200809T011706_A20200618T094432 /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200809T014236_A20200623T094429 /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200809T020424_A20200628T094431 /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200809T022605_A20200703T094428 /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200809T025150_A20200708T094430 /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200809T032544_A20200713T094428 /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200809T035347_A20200718T094431 /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200809T042107_A20200802T094429 /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200809T044527_A20200807T094432 /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200810T002306_A20200605T093441 /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200810T004957_A20200625T093440 /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200810T011848_A20200720T093437 /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200810T014608_A20200725T093440 /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200810T021912_A20200809T093438 /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200811T002327_A20200608T094438 /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200811T005133_A20200613T094434 /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200811T011714_A20200618T094438 /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200811T014455_A20200623T094435 /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200811T020910_A20200628T094437 /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200811T023754_A20200708T094436 /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200811T031054_A20200713T094433 /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200811T034023_A20200718T094437 /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200811T040702_A20200723T094434 /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200811T043149_A20200807T094438
config.prds_are_tif = 0
Extracting NDVI infos from the database for the list of products!!!
tile_list: ['35VMD', '35VND']
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S2_time_interval 5
locAcqTime 10:30:00
apply_model False
modelDir model
NDVI_nomow_model_perc 95.0
sampling_days 1.0
p_n_th 20
model_temporal_range_str ['20200101 00:00:00', '20201231 23:59:59']
start_params (0.05, 50.0, 0.05, 340.0)
bounds [[0.02, 0.0, 0.02, 180.0], [1, 180.0, 1, 360.0]]
prod_type_list ['SNDVI']
sc_fact [1000.0]
corrupted_th [0.1]
decreasing_abs_th [0.12]
decreasing_rate_th [-1e-06]
increasing_rate_th [0.06]
low_abs_th [0.5]
high_abs_th [0.75]
options_layer_burning ["['ALL_TOUCHED=False']"]
invalid_data [-10000.0]
no_mowing_after_det 60
non_overlap_interval_days 28
erode_pixels 0
stat_smpl_n 0
cnt_crop_TR: [('15/04/2020', '15/09/2020'), ('15/04/2020', '15/09/2020'), ('15/04/2020', '15/09/2020'), ('15/04/2020', '15/09/2020'), ('15/04/2020', '15/09/2020'), ('15/04/2020', '15/09/2020'), ('15/04/2020', '15/09/2020'), ('15/04/2020', '15/09/2020'), ('15/04/2020', '15/09/2020'), ('15/04/2020', '15/09/2020'), ('15/04/2020', '15/09/2020'), ('15/04/2020', '15/09/2020'), ('15/04/2020', '15/09/2020'), ('15/04/2020', '15/09/2020'), ('15/04/2020', '15/09/2020'), ('15/04/2020', '15/09/2020'), ('15/04/2020', '15/09/2020'), ('15/04/2020', '15/09/2020'), ('15/04/2020', '15/09/2020'), ('15/04/2020', '15/09/2020'), ('15/04/2020', '15/09/2020')]
cnt_crop_code ['710', '713', '714', '715', '716', '720', '723', '724', '725', '726', '727', '728', '729', '731', '732', '733', '734', '735', '736', '738', '739']
cnt_crop_rule [0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0]
['35VMD', '35VND']
Run tile: 35VMD
The processing can be run
File list generation from data dir
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path: /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200811T020910_A20200628T094437/TILES/S2AGRI_L3B_A20200628T094437_T35VMD/IMG_DATA/S2AGRI_L3B_SFAPARMONO_A20200628T094437_T35VMD.TIF
path: /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200811T020910_A20200628T094437/TILES/S2AGRI_L3B_A20200628T094437_T35VMD/IMG_DATA/S2AGRI_L3B_SFCOVERMONO_A20200628T094437_T35VMD.TIF
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path: /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200811T020910_A20200628T094437/TILES/S2AGRI_L3B_A20200628T094437_T35VMD/IMG_DATA/S2AGRI_L3B_SNDVI_A20200628T094437_T35VMD.TIF
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path: /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200809T025150_A20200708T094430/TILES/S2AGRI_L3B_A20200708T094430_T35VND/IMG_DATA/S2AGRI_L3B_SLAIMONO_A20200708T094430_T35VND.TIF
path: /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200809T025150_A20200708T094430/TILES/S2AGRI_L3B_A20200708T094430_T35VND/IMG_DATA/S2AGRI_L3B_SNDVI_A20200708T094430_T35VND.TIF
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path: /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200811T023754_A20200708T094436/TILES/S2AGRI_L3B_A20200708T094436_T35VMD/IMG_DATA/S2AGRI_L3B_SLAIMONO_A20200708T094436_T35VMD.TIF
path: /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200811T023754_A20200708T094436/TILES/S2AGRI_L3B_A20200708T094436_T35VMD/IMG_DATA/S2AGRI_L3B_SNDVI_A20200708T094436_T35VMD.TIF
path: /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200809T032544_A20200713T094428/TILES/S2AGRI_L3B_A20200713T094428_T35VND/IMG_DATA/S2AGRI_L3B_SFAPARMONO_A20200713T094428_T35VND.TIF
path: /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200809T032544_A20200713T094428/TILES/S2AGRI_L3B_A20200713T094428_T35VND/IMG_DATA/S2AGRI_L3B_SFCOVERMONO_A20200713T094428_T35VND.TIF
path: /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200809T032544_A20200713T094428/TILES/S2AGRI_L3B_A20200713T094428_T35VND/IMG_DATA/S2AGRI_L3B_SLAIMONO_A20200713T094428_T35VND.TIF
path: /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200809T032544_A20200713T094428/TILES/S2AGRI_L3B_A20200713T094428_T35VND/IMG_DATA/S2AGRI_L3B_SNDVI_A20200713T094428_T35VND.TIF
path: /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200811T031054_A20200713T094433/TILES/S2AGRI_L3B_A20200713T094433_T35VMD/IMG_DATA/S2AGRI_L3B_SFAPARMONO_A20200713T094433_T35VMD.TIF
path: /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200811T031054_A20200713T094433/TILES/S2AGRI_L3B_A20200713T094433_T35VMD/IMG_DATA/S2AGRI_L3B_SFCOVERMONO_A20200713T094433_T35VMD.TIF
path: /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200811T031054_A20200713T094433/TILES/S2AGRI_L3B_A20200713T094433_T35VMD/IMG_DATA/S2AGRI_L3B_SLAIMONO_A20200713T094433_T35VMD.TIF
path: /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200811T031054_A20200713T094433/TILES/S2AGRI_L3B_A20200713T094433_T35VMD/IMG_DATA/S2AGRI_L3B_SNDVI_A20200713T094433_T35VMD.TIF
path: /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200809T035347_A20200718T094431/TILES/S2AGRI_L3B_A20200718T094431_T35VND/IMG_DATA/S2AGRI_L3B_SFAPARMONO_A20200718T094431_T35VND.TIF
path: /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200809T035347_A20200718T094431/TILES/S2AGRI_L3B_A20200718T094431_T35VND/IMG_DATA/S2AGRI_L3B_SFCOVERMONO_A20200718T094431_T35VND.TIF
path: /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200809T035347_A20200718T094431/TILES/S2AGRI_L3B_A20200718T094431_T35VND/IMG_DATA/S2AGRI_L3B_SLAIMONO_A20200718T094431_T35VND.TIF
path: /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200809T035347_A20200718T094431/TILES/S2AGRI_L3B_A20200718T094431_T35VND/IMG_DATA/S2AGRI_L3B_SNDVI_A20200718T094431_T35VND.TIF
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path: /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200811T034023_A20200718T094437/TILES/S2AGRI_L3B_A20200718T094437_T35VMD/IMG_DATA/S2AGRI_L3B_SFCOVERMONO_A20200718T094437_T35VMD.TIF
path: /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200811T034023_A20200718T094437/TILES/S2AGRI_L3B_A20200718T094437_T35VMD/IMG_DATA/S2AGRI_L3B_SLAIMONO_A20200718T094437_T35VMD.TIF
path: /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200811T034023_A20200718T094437/TILES/S2AGRI_L3B_A20200718T094437_T35VMD/IMG_DATA/S2AGRI_L3B_SNDVI_A20200718T094437_T35VMD.TIF
path: /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200807T094555_A20200720T093432/TILES/S2AGRI_L3B_A20200720T093432_T35VND/IMG_DATA/S2AGRI_L3B_SFAPARMONO_A20200720T093432_T35VND.TIF
path: /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200807T094555_A20200720T093432/TILES/S2AGRI_L3B_A20200720T093432_T35VND/IMG_DATA/S2AGRI_L3B_SFCOVERMONO_A20200720T093432_T35VND.TIF
path: /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200807T094555_A20200720T093432/TILES/S2AGRI_L3B_A20200720T093432_T35VND/IMG_DATA/S2AGRI_L3B_SLAIMONO_A20200720T093432_T35VND.TIF
path: /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200807T094555_A20200720T093432/TILES/S2AGRI_L3B_A20200720T093432_T35VND/IMG_DATA/S2AGRI_L3B_SNDVI_A20200720T093432_T35VND.TIF
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path: /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200810T011848_A20200720T093437/TILES/S2AGRI_L3B_A20200720T093437_T35VMD/IMG_DATA/S2AGRI_L3B_SNDVI_A20200720T093437_T35VMD.TIF
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path: /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200811T040702_A20200723T094434/TILES/S2AGRI_L3B_A20200723T094434_T35VMD/IMG_DATA/S2AGRI_L3B_SFCOVERMONO_A20200723T094434_T35VMD.TIF
path: /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200811T040702_A20200723T094434/TILES/S2AGRI_L3B_A20200723T094434_T35VMD/IMG_DATA/S2AGRI_L3B_SLAIMONO_A20200723T094434_T35VMD.TIF
path: /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200811T040702_A20200723T094434/TILES/S2AGRI_L3B_A20200723T094434_T35VMD/IMG_DATA/S2AGRI_L3B_SNDVI_A20200723T094434_T35VMD.TIF
path: /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200810T014608_A20200725T093440/TILES/S2AGRI_L3B_A20200725T093440_T35VMD/IMG_DATA/S2AGRI_L3B_SFAPARMONO_A20200725T093440_T35VMD.TIF
path: /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200810T014608_A20200725T093440/TILES/S2AGRI_L3B_A20200725T093440_T35VMD/IMG_DATA/S2AGRI_L3B_SFCOVERMONO_A20200725T093440_T35VMD.TIF
path: /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200810T014608_A20200725T093440/TILES/S2AGRI_L3B_A20200725T093440_T35VMD/IMG_DATA/S2AGRI_L3B_SLAIMONO_A20200725T093440_T35VMD.TIF
path: /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200810T014608_A20200725T093440/TILES/S2AGRI_L3B_A20200725T093440_T35VMD/IMG_DATA/S2AGRI_L3B_SNDVI_A20200725T093440_T35VMD.TIF
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path: /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200809T042107_A20200802T094429/TILES/S2AGRI_L3B_A20200802T094429_T35VND/IMG_DATA/S2AGRI_L3B_SNDVI_A20200802T094429_T35VND.TIF
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path: /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200809T044527_A20200807T094432/TILES/S2AGRI_L3B_A20200807T094432_T35VND/IMG_DATA/S2AGRI_L3B_SFCOVERMONO_A20200807T094432_T35VND.TIF
path: /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200809T044527_A20200807T094432/TILES/S2AGRI_L3B_A20200807T094432_T35VND/IMG_DATA/S2AGRI_L3B_SLAIMONO_A20200807T094432_T35VND.TIF
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path: /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200811T043149_A20200807T094438/TILES/S2AGRI_L3B_A20200807T094438_T35VMD/IMG_DATA/S2AGRI_L3B_SFCOVERMONO_A20200807T094438_T35VMD.TIF
path: /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200811T043149_A20200807T094438/TILES/S2AGRI_L3B_A20200807T094438_T35VMD/IMG_DATA/S2AGRI_L3B_SLAIMONO_A20200807T094438_T35VMD.TIF
path: /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200811T043149_A20200807T094438/TILES/S2AGRI_L3B_A20200807T094438_T35VMD/IMG_DATA/S2AGRI_L3B_SNDVI_A20200807T094438_T35VMD.TIF
path: /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200810T021912_A20200809T093438/TILES/S2AGRI_L3B_A20200809T093438_T35VMD/IMG_DATA/S2AGRI_L3B_SFAPARMONO_A20200809T093438_T35VMD.TIF
path: /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200810T021912_A20200809T093438/TILES/S2AGRI_L3B_A20200809T093438_T35VMD/IMG_DATA/S2AGRI_L3B_SFCOVERMONO_A20200809T093438_T35VMD.TIF
path: /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200810T021912_A20200809T093438/TILES/S2AGRI_L3B_A20200809T093438_T35VMD/IMG_DATA/S2AGRI_L3B_SLAIMONO_A20200809T093438_T35VMD.TIF
path: /mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200810T021912_A20200809T093438/TILES/S2AGRI_L3B_A20200809T093438_T35VMD/IMG_DATA/S2AGRI_L3B_SNDVI_A20200809T093438_T35VMD.TIF
size par_list 60
fill pandas structure
File selection based on dates
validity_temporal_range_str [datetime.datetime(2020, 6, 1, 0, 0), datetime.datetime(2020, 8, 10, 23, 59, 59)]
select_date_interval [datetime.datetime(2020, 6, 1, 0, 0), datetime.datetime(2020, 8, 10, 23, 59, 59)]
15
Filtered file list
['/mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200810T002306_A20200605T093441/TILES/S2AGRI_L3B_A20200605T093441_T35VMD/IMG_DATA/S2AGRI_L3B_SNDVI_A20200605T093441_T35VMD.TIF'
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 '/mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200811T011714_A20200618T094438/TILES/S2AGRI_L3B_A20200618T094438_T35VMD/IMG_DATA/S2AGRI_L3B_SNDVI_A20200618T094438_T35VMD.TIF'
 '/mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200811T014455_A20200623T094435/TILES/S2AGRI_L3B_A20200623T094435_T35VMD/IMG_DATA/S2AGRI_L3B_SNDVI_A20200623T094435_T35VMD.TIF'
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 '/mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200811T023754_A20200708T094436/TILES/S2AGRI_L3B_A20200708T094436_T35VMD/IMG_DATA/S2AGRI_L3B_SNDVI_A20200708T094436_T35VMD.TIF'
 '/mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200811T031054_A20200713T094433/TILES/S2AGRI_L3B_A20200713T094433_T35VMD/IMG_DATA/S2AGRI_L3B_SNDVI_A20200713T094433_T35VMD.TIF'
 '/mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200811T034023_A20200718T094437/TILES/S2AGRI_L3B_A20200718T094437_T35VMD/IMG_DATA/S2AGRI_L3B_SNDVI_A20200718T094437_T35VMD.TIF'
 '/mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200810T011848_A20200720T093437/TILES/S2AGRI_L3B_A20200720T093437_T35VMD/IMG_DATA/S2AGRI_L3B_SNDVI_A20200720T093437_T35VMD.TIF'
 '/mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200811T040702_A20200723T094434/TILES/S2AGRI_L3B_A20200723T094434_T35VMD/IMG_DATA/S2AGRI_L3B_SNDVI_A20200723T094434_T35VMD.TIF'
 '/mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200810T014608_A20200725T093440/TILES/S2AGRI_L3B_A20200725T093440_T35VMD/IMG_DATA/S2AGRI_L3B_SNDVI_A20200725T093440_T35VMD.TIF'
 '/mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200811T043149_A20200807T094438/TILES/S2AGRI_L3B_A20200807T094438_T35VMD/IMG_DATA/S2AGRI_L3B_SNDVI_A20200807T094438_T35VMD.TIF'
 '/mnt/archive/rugaju_dwnld/l3b_lai//S2AGRI_L3B_PRD_S5_20200810T021912_A20200809T093438/TILES/S2AGRI_L3B_A20200809T093438_T35VMD/IMG_DATA/S2AGRI_L3B_SNDVI_A20200809T093438_T35VMD.TIF']
/mnt/archive/orchestrator_temp/s4c_l4b/1274/10307-s4c-grassland-gen-input-shp/SEN4CAP_L4B_GeneratedInputShp.shp
Make virtual raster of input data (without considering extension of the shape file)
/mnt/archive/orchestrator_temp/s4c_l4b/1274/10308-s4c-grassland-mowing/SEN4CAP_L4B_S2_OutputData/tmp/data_cube_tmp.vrt
virtual raster extent (578605.5519513446, 289853.82012454624, 693158.7541034151, 404407.02227661666)
shape file extent (671928.6398999998, 304987.9603000004, 703441.8378999997, 334442.3825000003)
intesection extent (671928.6398999998, 304987.9603000004, 693158.7541034151, 334442.3825000003)
Make virtual raster of input data (considering intersection between extensions of i- the shape file, ii- the virtual raster)
/mnt/archive/orchestrator_temp/s4c_l4b/1274/10308-s4c-grassland-mowing/SEN4CAP_L4B_S2_OutputData/tmp/data_cube.vrt
Images in VRT: 15
Generate segmentation map from input shapefiles
segmentsOutputDir /mnt/archive/orchestrator_temp/s4c_l4b/1274/10308-s4c-grassland-mowing/SEN4CAP_L4B_S2_OutputData/segments
segmentsOutRaster /mnt/archive/orchestrator_temp/s4c_l4b/1274/10308-s4c-grassland-mowing/SEN4CAP_L4B_S2_OutputData/segments/SEN4CAP_L4B_GeneratedInputShp_raster.tif
layer2mask for segments:  /mnt/archive/orchestrator_temp/s4c_l4b/1274/10307-s4c-grassland-gen-input-shp/SEN4CAP_L4B_GeneratedInputShp.shp /mnt/archive/orchestrator_temp/s4c_l4b/1274/10308-s4c-grassland-mowing/SEN4CAP_L4B_S2_OutputData/tmp/data_cube.vrt /mnt/archive/orchestrator_temp/s4c_l4b/1274/10308-s4c-grassland-mowing/SEN4CAP_L4B_S2_OutputData/segments/SEN4CAP_L4B_GeneratedInputShp_raster.tif
input raster transform (671928.6398999998, 10.002025858034614, 0.0, 334442.3825000003, 0.0, -10.002025858034614)
input raster extent [671928.6399     693162.94079661 304986.41634809 334442.3825    ]
input raster projection PROJCS["LKS92 / Latvia TM",
    GEOGCS["LKS92",
        DATUM["Latvia_1992",
            SPHEROID["GRS 1980",6378137,298.257222101,
                AUTHORITY["EPSG","7019"]],
            AUTHORITY["EPSG","6661"]],
        PRIMEM["Greenwich",0,
            AUTHORITY["EPSG","8901"]],
        UNIT["degree",0.0174532925199433,
            AUTHORITY["EPSG","9122"]],
        AUTHORITY["EPSG","4661"]],
    PROJECTION["Transverse_Mercator"],
    PARAMETER["latitude_of_origin",0],
    PARAMETER["central_meridian",24],
    PARAMETER["scale_factor",0.9996],
    PARAMETER["false_easting",500000],
    PARAMETER["false_northing",-6000000],
    UNIT["metre",1,
        AUTHORITY["EPSG","9001"]],
    AXIS["Northing",NORTH],
    AXIS["Easting",EAST],
    AUTHORITY["EPSG","3059"]]
Spatial index file: /mnt/archive/orchestrator_temp/s4c_l4b/1274/10307-s4c-grassland-gen-input-shp/SEN4CAP_L4B_GeneratedInputShp.qix
Traceback (most recent call last):
  File "/usr/share/sen2agri/S4C_L4B_GrasslandMowing/Bin/src_s2/S2_main.py", line 963, in <module>
    main()
  File "/usr/share/sen2agri/S4C_L4B_GrasslandMowing/Bin/src_s2/S2_main.py", line 960, in main
    do_cmpl=s4cConfig.do_cmpl, test=s4cConfig.test)
  File "/usr/share/sen2agri/S4C_L4B_GrasslandMowing/Bin/src_s2/S2_main.py", line 740, in main_run
    test=test)
  File "/usr/share/sen2agri/S4C_L4B_GrasslandMowing/Bin/src_s2/S2_main.py", line 222, in run_proc
    burned_pixels, seg_attributes = S2_gmd.layer2mask(segmentsFile, output_vrt, segmentsOutRaster, layer_type='segments', options=options_layer_burning)
  File "/usr/share/sen2agri/S4C_L4B_GrasslandMowing/Bin/src_s2/S2_gmd.py", line 416, in layer2mask
    ogr_data.ExecuteSQL('CREATE SPATIAL INDEX ON %s' % LayerName)
  File "/home/sen2agri-service/miniconda3/envs/sen4cap/lib/python3.6/site-packages/osgeo/ogr.py", line 800, in ExecuteSQL
    return _ogr.DataSource_ExecuteSQL(self, *args, **kwargs)
RuntimeError: CreateSpatialIndex : unsupported operation on a read-only datasource.